RxDock 0.1.0
A fast, versatile, and open-source program for docking ligands to proteins and nucleic acids
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BaseInterSF.h
1/***********************************************************************
2 * The rDock program was developed from 1998 - 2006 by the software team
3 * at RiboTargets (subsequently Vernalis (R&D) Ltd).
4 * In 2006, the software was licensed to the University of York for
5 * maintenance and distribution.
6 * In 2012, Vernalis and the University of York agreed to release the
7 * program as Open Source software.
8 * This version is licensed under GNU-LGPL version 3.0 with support from
9 * the University of Barcelona.
10 * http://rdock.sourceforge.net/
11 ***********************************************************************/
12
13// Virtual base class for intermolecular scoring functions. Overrides Update()
14
15#ifndef _RBTBASEINTERSF_H_
16#define _RBTBASEINTERSF_H_
17
18#include "rxdock/BaseSF.h"
19#include "rxdock/Model.h"
20
21#include <nlohmann/json.hpp>
22
23using json = nlohmann::json;
24
25namespace rxdock {
26
27class BaseInterSF : public virtual BaseSF {
28public:
29 // Class type string
30 static const std::string _CT;
31
33 // Constructors/destructors
34 virtual ~BaseInterSF();
35
36 friend void to_json(json &j, const BaseInterSF &baseInterSF);
37 friend void from_json(const json &j, BaseInterSF &baseInterSF);
38
40 // Public methods
42
43 ModelPtr GetReceptor() const;
44 ModelPtr GetLigand() const;
45 ModelList GetSolvent() const;
46
47 // Override Observer pure virtual
48 // Notify observer that subject has changed
49 virtual void Update(Subject *theChangedSubject);
50
51protected:
53 // Protected methods
56
57 // PURE VIRTUAL - Derived classes must override
58 virtual void SetupReceptor() = 0; // Called by Update when receptor is changed
59 virtual void SetupLigand() = 0; // Called by Update when ligand is changed
60 virtual void SetupSolvent() {} // Called by Update when solvent is changed
61 virtual void
62 SetupScore() = 0; // Called by Update when either model has changed
63
64private:
66 // Private methods
68
69protected:
71 // Protected data
73
74private:
76 // Private data
78 ModelPtr m_spReceptor;
79 ModelPtr m_spLigand;
80 ModelList m_solventList;
81};
82
83void to_json(json &j, const BaseInterSF &baseInterSF);
84void from_json(const json &j, BaseInterSF &baseInterSF);
85
86} // namespace rxdock
87
88#endif //_RBTBASEINTERSF_H_
Definition BaseInterSF.h:27
Definition BaseSF.h:28
Definition Subject.h:35