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RxDock 0.1.0
A fast, versatile, and open-source program for docking ligands to proteins and nucleic acids
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RxDock 0.1.0
A fast, versatile, and open-source program for docking ligands to proteins and nucleic acids
|
This is the complete list of members for rxdock::PolarIdxSF, including all inherited members.
| _A1 (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _A2 (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _ABS_DR12 (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _ANNOTATION_FIELD (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | static |
| _ATTR (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | static |
| _BORDER (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | static |
| _CLASS (defined in rxdock::BaseObject) | rxdock::BaseObject | static |
| _CT (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | static |
| _DA1MAX (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _DA1MIN (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _DA2MAX (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _DA2MIN (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _DR12MAX (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _DR12MIN (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _ENABLED (defined in rxdock::BaseObject) | rxdock::BaseObject | static |
| _GRIDSTEP (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | static |
| _GUAN_PLANE (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _INCGUAN (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _INCHBA (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _INCHBD (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _INCMETAL (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _INCR (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | static |
| _INTRA_SF (defined in rxdock::BaseSF) | rxdock::BaseSF | static |
| _LP_DPHIMAX (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _LP_DPHIMIN (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _LP_DTHETAMAX (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _LP_DTHETAMIN (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _LP_OSP2 (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _LP_PHI (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _NAME (defined in rxdock::BaseObject) | rxdock::BaseObject | static |
| _R12FACTOR (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _R12INCR (defined in rxdock::PolarSF) | rxdock::PolarSF | static |
| _RANGE (defined in rxdock::BaseSF) | rxdock::BaseSF | static |
| _SYSTEM_SF (defined in rxdock::BaseSF) | rxdock::BaseSF | static |
| _THRESHOLD_NEG (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | static |
| _THRESHOLD_POS (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | static |
| _WEIGHT (defined in rxdock::BaseSF) | rxdock::BaseSF | static |
| Add(BaseSF *) (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| AddAnnotation(AnnotationPtr spAnnotation) const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | protected |
| AddParameter(const std::string &strName, const Variant &vValue) (defined in rxdock::ParamHandler) | rxdock::ParamHandler | protected |
| AddToParentMapEntry(StringVariantMap &scoreMap, double rs) const (defined in rxdock::BaseSF) | rxdock::BaseSF | protected |
| AnnotationHandler() (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | protected |
| BaseIdxSF() (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| BaseInterSF() (defined in rxdock::BaseInterSF) | rxdock::BaseInterSF | protected |
| BaseObject(const std::string &strClass, const std::string &strName) (defined in rxdock::BaseObject) | rxdock::BaseObject | protected |
| BaseObject() (defined in rxdock::BaseObject) | rxdock::BaseObject | protected |
| BaseSF(const std::string &strClass, const std::string &strName) (defined in rxdock::BaseSF) | rxdock::BaseSF | protected |
| BaseSF() (defined in rxdock::BaseSF) | rxdock::BaseSF | protected |
| BuildIntraMap(const InteractionCenterList &ICList1, const InteractionCenterList &ICList2, InteractionListMap &intns) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| BuildIntraMap(const InteractionCenterList &ICList, InteractionListMap &intns) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| ClearAnnotationList() const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | protected |
| ClearLigand() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protected |
| ClearParameters() (defined in rxdock::ParamHandler) | rxdock::ParamHandler | protected |
| ClearReceptor() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protected |
| ClearSolvent() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protected |
| CreateAcceptorInteractionCenters(const AtomList &atomList) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| CreateDonorInteractionCenters(const AtomList &atomList) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| CreateInteractionGrid() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| CreateNonBondedGrid() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| CreateNonBondedHHSGrid() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| Deleted(Subject *theDeletedSubject) (defined in rxdock::BaseObject) | rxdock::BaseObject | virtual |
| DeleteList(InteractionCenterList &icList) (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protected |
| DeleteParameter(const std::string &strName) (defined in rxdock::ParamHandler) | rxdock::ParamHandler | protected |
| Disable() (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| Enable() (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| EnableAnnotations(bool bEnabled) const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | protected |
| GetA1prms() const (defined in rxdock::PolarSF) | rxdock::PolarSF | inlineprotected |
| GetA2prms() const (defined in rxdock::PolarSF) | rxdock::PolarSF | inlineprotected |
| GetAnnotationList() const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | |
| GetBorder() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | |
| GetClass() const (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| GetCorrectedRange() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| GetFullName() const (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| GetGridStep() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | |
| GetIncr() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | static |
| GetLigand() const (defined in rxdock::BaseInterSF) | rxdock::BaseInterSF | |
| GetMaxError() const (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| GetName() const (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| GetNumAnnotations() const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | |
| GetNumParameters() const (defined in rxdock::ParamHandler) | rxdock::ParamHandler | |
| GetNumSF() const (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| GetParameter(const std::string &strName) const (defined in rxdock::ParamHandler) | rxdock::ParamHandler | |
| GetParameterNames() const (defined in rxdock::ParamHandler) | rxdock::ParamHandler | |
| GetParameters() const (defined in rxdock::ParamHandler) | rxdock::ParamHandler | |
| GetParentSF() const (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| GetRange() const (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| GetReceptor() const (defined in rxdock::BaseInterSF) | rxdock::BaseInterSF | |
| GetRprms() const (defined in rxdock::PolarSF) | rxdock::PolarSF | inlineprotected |
| GetSF(unsigned int iSF) const (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| GetSolvent() const (defined in rxdock::BaseInterSF) | rxdock::BaseInterSF | |
| GetWeight() const (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| GetWorkSpace() const (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| HandleRequest(RequestPtr spRequest) (defined in rxdock::BaseObject) | rxdock::BaseObject | virtual |
| IntraScore(const InteractionCenterList &posList, const InteractionCenterList &negList, const InteractionListMap &prtIntns, bool attr) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| isAgg() const (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| isAnnotationEnabled() const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | |
| isEnabled() const (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| isParameterValid(const std::string &strName) const (defined in rxdock::ParamHandler) | rxdock::ParamHandler | |
| Observer() (defined in rxdock::Observer) | rxdock::Observer | protected |
| Orphan() (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| OwnParameterUpdated(const std::string &strName) (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | protected |
| OwnParameterUpdated(const std::string &strName) (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| ParameterUpdated(const std::string &strName) (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protectedvirtual |
| ParamHandler() (defined in rxdock::ParamHandler) | rxdock::ParamHandler | protected |
| Partition(const InteractionCenterList &posList, const InteractionCenterList &negList, const InteractionListMap &intns, InteractionListMap &prtIntns, double dist=0.0) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| PolarIdxSF(const std::string &strName="polar") (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | |
| PolarScore(const InteractionCenter *intn, const InteractionCenterList &intnList, const f1prms &Rprms, const f1prms &A1prms, const f1prms &A2prms) const (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| PolarSF() (defined in rxdock::PolarSF) | rxdock::PolarSF | protected |
| Print(std::ostream &s) const (defined in rxdock::BaseObject) | rxdock::BaseObject | virtual |
| RawScore() const (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protectedvirtual |
| Register(WorkSpace *) (defined in rxdock::BaseObject) | rxdock::BaseObject | virtual |
| Remove(BaseSF *) (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| RenderAnnotationList(const std::string &strName, std::vector< std::string > &retVal) const (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | |
| RequestHandler() (defined in rxdock::RequestHandler) | rxdock::RequestHandler | inline |
| Score() const (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| ScoreMap(StringVariantMap &scoreMap) const (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | virtual |
| SetBorder(double border) (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | |
| SetGridStep(double step) (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | |
| SetName(const std::string &) (defined in rxdock::BaseObject) | rxdock::BaseObject | |
| SetParameter(const std::string &strName, const Variant &vValue) (defined in rxdock::ParamHandler) | rxdock::ParamHandler | |
| SetRange(double) (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| SetupLigand() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protectedvirtual |
| SetupReceptor() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protectedvirtual |
| SetupScore() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protectedvirtual |
| SetupSolvent() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | protectedvirtual |
| SetWeight(double) (defined in rxdock::BaseSF) | rxdock::BaseSF | |
| Unregister() (defined in rxdock::BaseObject) | rxdock::BaseObject | virtual |
| Update(Subject *theChangedSubject) (defined in rxdock::BaseInterSF) | rxdock::BaseInterSF | virtual |
| ~AnnotationHandler() (defined in rxdock::AnnotationHandler) | rxdock::AnnotationHandler | virtual |
| ~BaseIdxSF() (defined in rxdock::BaseIdxSF) | rxdock::BaseIdxSF | virtual |
| ~BaseInterSF() (defined in rxdock::BaseInterSF) | rxdock::BaseInterSF | virtual |
| ~BaseObject() (defined in rxdock::BaseObject) | rxdock::BaseObject | virtual |
| ~BaseSF() (defined in rxdock::BaseSF) | rxdock::BaseSF | virtual |
| ~Observer() (defined in rxdock::Observer) | rxdock::Observer | virtual |
| ~ParamHandler() (defined in rxdock::ParamHandler) | rxdock::ParamHandler | virtual |
| ~PolarIdxSF() (defined in rxdock::PolarIdxSF) | rxdock::PolarIdxSF | virtual |
| ~PolarSF() (defined in rxdock::PolarSF) | rxdock::PolarSF | virtual |
| ~RequestHandler() (defined in rxdock::RequestHandler) | rxdock::RequestHandler | inlinevirtual |
1.9.7