RxDock
0.1.0
A fast, versatile, and open-source program for docking ligands to proteins and nucleic acids
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rxdock
SimAnnTransform
rxdock::SimAnnTransform Member List
This is the complete list of members for
rxdock::SimAnnTransform
, including all inherited members.
_BLOCK_LENGTH
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_CLASS
(defined in
rxdock::BaseObject
)
rxdock::BaseObject
static
_CT
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_ENABLED
(defined in
rxdock::BaseObject
)
rxdock::BaseObject
static
_FINAL_T
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_HISTORY_FREQ
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_MIN_ACC_RATE
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_NAME
(defined in
rxdock::BaseObject
)
rxdock::BaseObject
static
_NUM_BLOCKS
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_PARTITION_DIST
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_PARTITION_FREQ
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_SCALE_CHROM_LENGTH
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_START_T
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
_STEP_SIZE
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
Add
(BaseTransform *) (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
AddParameter
(const std::string &strName, const Variant &vValue) (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
protected
AddSFRequest
(RequestPtr) (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
BaseBiMolTransform
(const std::string &strClass, const std::string &strName) (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
protected
BaseObject
(const std::string &strClass, const std::string &strName) (defined in
rxdock::BaseObject
)
rxdock::BaseObject
protected
BaseObject
() (defined in
rxdock::BaseObject
)
rxdock::BaseObject
protected
BaseTransform
(const std::string &strClass, const std::string &strName) (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
protected
ClearParameters
() (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
protected
ClearSFRequests
() (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
Deleted
(Subject *theDeletedSubject) (defined in
rxdock::BaseObject
)
rxdock::BaseObject
virtual
DeleteParameter
(const std::string &strName) (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
protected
Disable
() (defined in
rxdock::BaseObject
)
rxdock::BaseObject
Enable
() (defined in
rxdock::BaseObject
)
rxdock::BaseObject
Execute
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
protected
virtual
from_json
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
friend
GetBlockLength
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetClass
() const (defined in
rxdock::BaseObject
)
rxdock::BaseObject
GetFinalT
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetFullName
() const (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
GetLigand
() const (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
GetName
() const (defined in
rxdock::BaseObject
)
rxdock::BaseObject
GetNumBlocks
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetNumParameters
() const (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
GetNumTransforms
() const (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
GetParameter
(const std::string &strName) const (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
GetParameterNames
() const (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
GetParameters
() const (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
GetParentTransform
() const (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
GetPartitionDist
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetPartitionFreq
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetReceptor
() const (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
GetSolvent
() const (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
GetStartT
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetStepSize
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
static
GetTransform
(unsigned int) const (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
GetWorkSpace
() const (defined in
rxdock::BaseObject
)
rxdock::BaseObject
Go
() (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
HandleRequest
(RequestPtr spRequest) (defined in
rxdock::BaseObject
)
rxdock::BaseObject
virtual
isAgg
() const (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
isEnabled
() const (defined in
rxdock::BaseObject
)
rxdock::BaseObject
isParameterValid
(const std::string &strName) const (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
MC
(double t, int blockLen, double stepSize) (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
protected
Observer
() (defined in
rxdock::Observer
)
rxdock::Observer
protected
Orphan
() (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
ParameterUpdated
(const std::string &strName) (defined in
rxdock::BaseObject
)
rxdock::BaseObject
protected
virtual
ParamHandler
() (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
protected
Print
(std::ostream &s) const (defined in
rxdock::BaseObject
)
rxdock::BaseObject
virtual
Register
(WorkSpace *) (defined in
rxdock::BaseObject
)
rxdock::BaseObject
virtual
Remove
(BaseTransform *) (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
RequestHandler
() (defined in
rxdock::RequestHandler
)
rxdock::RequestHandler
inline
SendSFRequests
() (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
SetName
(const std::string &) (defined in
rxdock::BaseObject
)
rxdock::BaseObject
SetParameter
(const std::string &strName, const Variant &vValue) (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
SetupLigand
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
protected
virtual
SetupReceptor
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
protected
virtual
SetupSolvent
() (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
inline
protected
virtual
SetupTransform
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
protected
virtual
SimAnnTransform
(const std::string &strName="SIMANN") (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
to_json
(defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
friend
Unregister
() (defined in
rxdock::BaseObject
)
rxdock::BaseObject
virtual
Update
(Subject *theChangedSubject) (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
virtual
~BaseBiMolTransform
() (defined in
rxdock::BaseBiMolTransform
)
rxdock::BaseBiMolTransform
virtual
~BaseObject
() (defined in
rxdock::BaseObject
)
rxdock::BaseObject
virtual
~BaseTransform
() (defined in
rxdock::BaseTransform
)
rxdock::BaseTransform
virtual
~Observer
() (defined in
rxdock::Observer
)
rxdock::Observer
virtual
~ParamHandler
() (defined in
rxdock::ParamHandler
)
rxdock::ParamHandler
virtual
~RequestHandler
() (defined in
rxdock::RequestHandler
)
rxdock::RequestHandler
inline
virtual
~SimAnnTransform
() (defined in
rxdock::SimAnnTransform
)
rxdock::SimAnnTransform
virtual
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