RxDock: Class Index

A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | V | W

A: AddCommand (rxdock); AlignTransform (rxdock); AndCriteria (rxdock::neldermead); Ann_Cmp_AtomId2 (rxdock); Annotation (rxdock); AnnotationHandler (rxdock); AromIdxSF (rxdock); Assertion (rxdock); Atom (rxdock); AtomPtrCmp_AtomicNo (rxdock); AtomPtrCmp_AtomId (rxdock); AtomPtrCmp_AtomName (rxdock); AtomPtrCmp_Ptr (rxdock)

B: BadArgument (rxdock); BadReceptorFile (rxdock); BaseBiMolTransform (rxdock); BaseFileSink (rxdock); BaseFileSource (rxdock); BaseGrid (rxdock); BaseIdxSF (rxdock); BaseInterSF (rxdock); BaseIntraSF (rxdock); BaseMolecularDataSource (rxdock); BaseMolecularFileSink (rxdock); BaseMolecularFileSource (rxdock); BaseObject (rxdock); BaseSF (rxdock); BaseTransform (rxdock); BaseUniMolTransform (rxdock); BiMolWorkSpace (rxdock); Bond (rxdock); BondPCmp_BondId (rxdock)

C: Cavity (rxdock); CavityFillSF (rxdock); CavityGridSF (rxdock); CavityPtrCmp_Distance (rxdock); CavityPtrCmp_Volume (rxdock); Cell (rxdock); CellContext (rxdock); CellTokenIter (rxdock); CharmmDataSource (rxdock); CharmmType (rxdock); CharmmTypesFileSource (rxdock); Chrom (rxdock); ChromDihedralElement (rxdock); ChromDihedralRefData (rxdock); ChromElement (rxdock); ChromFactory (rxdock); ChromOccupancyElement (rxdock); ChromOccupancyRefData (rxdock); ChromPositionElement (rxdock); ChromPositionRefData (rxdock); ChromTest (rxdock::unittest); Command (rxdock); Commands (rxdock); Constraint (rxdock); ConstSF (rxdock); Context (rxdock); Coord (rxdock); CoordCmp (rxdock); CrdFileSink (rxdock); CrdFileSource (rxdock); CSVFileSink (rxdock); CyclicAtom (rxdock)

D: DihedralElement (rxdock); DihedralIntraSF (rxdock); DihedralSF (rxdock); DihedralTargetSF (rxdock); DirectorySource (rxdock); DirIsNotAccessible (rxdock); DivCommand (rxdock); DockingError (rxdock); DockingSite (rxdock)

E: ElementData (rxdock); ElementFileSource (rxdock); EnumerateSymCoords (rxdock); EnvNotDefined (rxdock); Error (rxdock); Euler (rxdock); EvaluateVisitor (rxdock); ExpCommand (rxdock)

F: PolarSF::f1prms (rxdock); FFTGrid (rxdock); FFTPeak (rxdock); FileError (rxdock); FileMissingParameter (rxdock); FileParseError (rxdock); FileReadError (rxdock); FileWriteError (rxdock); Filter (rxdock); FilterAddExp (rxdock); FilterAndExp (rxdock); FilterDivExp (rxdock); FilterExpExp (rxdock); FilterExpression (rxdock); FilterExpressionVisitor (rxdock); FilterIfExp (rxdock); FilterLogExp (rxdock); FilterMulExp (rxdock); FilterSubExp (rxdock); FilterVbleExp (rxdock); FlexAtomFactory (rxdock); FlexData (rxdock); FlexDataVisitor (rxdock)

G: GATransform (rxdock); Genome (rxdock); GenomeCmp_Score (rxdock); GPChromosome (rxdock::geneticprogram); GPFFCHK1 (rxdock::geneticprogram); GPFFCrossDock (rxdock::geneticprogram); GPFFGold (rxdock::geneticprogram); GPFFHSP90 (rxdock::geneticprogram); GPFFSpike (rxdock::geneticprogram); GPFitnessFunction (rxdock::geneticprogram); GPGenome (rxdock::geneticprogram); GPParser (rxdock::geneticprogram); GPPopulation (rxdock::geneticprogram)

H: HBAConstraint (rxdock); HBDConstraint (rxdock); CavityGridSF::HeavyAtomFactory (rxdock); HeavyConstraint (rxdock); HHS_Solvation (rxdock); HHSType (rxdock); HydroAliphaticConstraint (rxdock); HydroAromaticConstraint (rxdock); HydroConstraint (rxdock)

I: IfCommand (rxdock); TriposAtomType::info (rxdock); InitHHS (rxdock); InteractionCenter (rxdock); InteractionCenterCmp (rxdock); InteractionGrid (rxdock); InteractionGridTemplate (rxdock); InteractionGridTemplatePtr (rxdock); InteractionNode (rxdock); InteractionNodeList (rxdock); InteractionNodeListMap (rxdock); InteractionNodeListMapConstIter (rxdock); InteractionNodeListMapIter (rxdock); InvalidRequest (rxdock); InvertSelectAtom (rxdock); isAtom_12Connected (rxdock); isAtom_13Connected (rxdock); isAtom_eq (rxdock); isAtomAnionic (rxdock); isAtomBridgehead (rxdock); isAtomCationic (rxdock); isAtomCharged (rxdock); isAtomCyclic (rxdock); isAtomEnabled (rxdock); isAtomExtended (rxdock); isAtomGuanidiniumCarbon (rxdock); isAtomHBondAcceptor (rxdock); isAtomHBondDonor (rxdock); isAtomicNo_eq (rxdock); isAtomId_eq (rxdock); DockingSite::isAtomInRange (rxdock); isAtomInsideCuboid (rxdock); isAtomInsideSphere (rxdock); isAtomIonic (rxdock); isAtomLipophilic (rxdock); isAtomMetal (rxdock); isAtomName_eq (rxdock); isAtomNearCoordList (rxdock); isAtomNegCharged (rxdock); isAtomNitroN (rxdock); isAtomPlanar (rxdock); isAtomPosCharged (rxdock); isAtomPtr_eq (rxdock); isAtomRNA (rxdock); isAtomSelected (rxdock); isBond_eq (rxdock); isBondAmide (rxdock); isBondCyclic (rxdock); isBondPtr_eq (rxdock); isBondRotatable (rxdock); isBondSelected (rxdock); isBondToNH3 (rxdock); isBondToOH (rxdock); isCavityNearCoord (rxdock); isCoordinationNumber_eq (rxdock); isFFType_eq (rxdock); isGenome_eq (rxdock); isHHSSelected (rxdock); isHHSType_eq (rxdock); isHybridState_eq (rxdock); isInteractionCenterSelected (rxdock); isInteractionD_lt (rxdock); isPiAtom (rxdock); isSegmentName_eq (rxdock); isSubunitId_eq (rxdock); isSubunitName_eq (rxdock); IterationCriterion (rxdock::neldermead)

L: LigandError (rxdock); LigandFlexData (rxdock); LigandSiteMapper (rxdock); LogCommand (rxdock)

M: MCStats (rxdock); MdlFileSink (rxdock); MdlFileSource (rxdock); Model (rxdock); ModelError (rxdock); ModelMutator (rxdock); MOEGrid (rxdock); MOEGridPoint (rxdock); MOEGridShape (rxdock); MOL2FileSource (rxdock); MOL2Substructure (rxdock); MulCommand (rxdock)

N: NegChargeConstraint (rxdock); NmrRestraintFileSource (rxdock); NmrSF (rxdock); NoeEndAtoms (rxdock); NoeEndNames (rxdock); NoeRestraintAtoms (rxdock); NoeRestraintNames (rxdock); NoFileInDir (rxdock); NonBondedGrid (rxdock); NonBondedHHSGrid (rxdock); NullTransform (rxdock)

O: Observer (rxdock); OccupancyTest (rxdock::unittest); OverlapHHS (rxdock); OverlapVariableHHS (rxdock)

P: ParameterFileSource (rxdock); ParamHandler (rxdock); Parser (rxdock); PartitionHHS (rxdock); PdbFileSource (rxdock); PharmaSF (rxdock); Plane (rxdock); PMFDirSource (rxdock); PMFGridSF (rxdock); PMFIdxSF (rxdock); PMFValue (rxdock); PolarIdxSF (rxdock); PolarIntraSF (rxdock); PolarSF (rxdock); PopCmp (rxdock::geneticprogram); Population (rxdock); PosChargeConstraint (rxdock); PrettyPrintVisitor (rxdock); PrincipalAxes (rxdock); PrintVisitor (rxdock); PRMFactory (rxdock); DihedralElement::prms (rxdock); PseudoAtom (rxdock); PsfFileSink (rxdock); PsfFileSource (rxdock)

Q: Quat (rxdock)

R: Rand (rxdock); RandLigTransform (rxdock); RandPopTransform (rxdock); RealGrid (rxdock); ReceptorFlexData (rxdock); RelativeValueCriterion (rxdock::neldermead); Request (rxdock); RequestHandler (rxdock); RestoreHHS (rxdock); RingAromaticConstraint (rxdock); RotateAtomUsingQuat (rxdock); RotateAtomUsingQuatIfSelected (rxdock); RotSF (rxdock)

S: SAIdxSF (rxdock); SaveHHS (rxdock); SearchTest (rxdock::unittest); SelectAtom (rxdock); SelectFlexAtoms (rxdock); SelectInteractionCenter (rxdock); SetupPMFSF (rxdock); SetupPolarSF (rxdock); SetupSASF (rxdock); SFAgg (rxdock); SFDisableRequest (rxdock); SFEnableRequest (rxdock); SFFactory (rxdock); SFPartitionRequest (rxdock); SFSetParamRequest (rxdock); SimAnnTransform (rxdock); SimpleSolvationParameters (rxdock); Simplex (rxdock::neldermead); SimplexCostFunction (rxdock); SimplexTransform (rxdock); Singleton (rxdock); SiteMapper (rxdock); SiteMapperFactory (rxdock); SmartPtr (rxdock); SolventFlexData (rxdock); SphereSiteMapper (rxdock); State (rxdock::neldermead); StdRestraintAtoms (rxdock); StdRestraintNames (rxdock); StringContext (rxdock); StringTokenIter (rxdock); StringTooLong (rxdock); SubCommand (rxdock); Subject (rxdock); SymBond (rxdock)

T: TetherSF (rxdock); Token (rxdock); TokenIter (rxdock); TransformAgg (rxdock); TransformFactory (rxdock); TranslateAtom (rxdock); TranslateAtomIfSelected (rxdock); TriposAtomType (rxdock)

V: Variant (rxdock); Vble (rxdock); VdwGridSF (rxdock); VdwIdxSF (rxdock); VdwIntraSF (rxdock); VdwSF (rxdock)

W: WorkSpace (rxdock)